Publication & Communications

Publications in Peer-reviewed International Journals

( * = UNDERGRADUATE AUTHOR)

Assessing the depth distribution of abundant and active marine planktonic ciliates

Tucker, S. J., McManus, G. B., Katz, L. A. and Grattepanche J.-D.

To be submitted mid september 2016

Patchiness of ciliate communities sampled at varying spatial scales along the New England shelf

​​Grattepanche, J.-D., McManus, G. B. and Katz, L. A.

submitted


Unexpected biodiversity of ciliates in marine samples taken below the photic zone

​​Grattepanche, J.-D., Santoferrara, L. F., McManus, G. B. and Katz L. A.

Molecular Ecology 25 (16), 3987-4000. IF 5.95

2016


Spatial and Temporal Distributions of Ciliates in New England Tide Pools. Accepted with minor revision in Aquatic Microbial Ecology.

*Badger, M., Tucker, S. J., Grattepanche, J.-D. and Katz, L. A.

Depth pattern of planktonic ciliates diversity and activity. Accepted with moderate revision in Frontiers in Microbiology.

Tucker, S. J., McManus, G. B., Katz, L. A. and Grattepanche, J.-D.

Patchiness of ciliate communities sampled at varying spatial scales along the New England shelf.

PLOS ONE 11(12): e0167659. doi: 10.1371/journal.pone.0167659. IF 3.23

Grattepanche, J.-D., McManus, G. B. and Katz, L. A.

2016

Unexpected biodiversity of ciliates in marine samples taken below the photic zone.

Molecular Ecology 25(16), 3987-4000. IF 5.95

Grattepanche, J.-D., Santoferrara, L. F., McManus, G. B. and Katz, L. A.

2016

Patterns and processes in protist biogeography: do molecules and morphologies give the same answers?

Santoferrara, L. F., Grattepanche, J.-D., Katz L. A. and McManus, G. B.

ISME journal 10, 1779-1790. IF 9.30

2016



Distinct assemblage of planktonic ciliates dominates both photic and deep waters

Grattepanche, J.-D., Santoferrara, L, McManus, G. B. and Katz L. A.

Mar. Ecol. Prog. Ser. , 526, 1-9. IF 2.64

2015



Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria

Grattepanche, J.-D., Santoferrara, L, McManus, G. B. and Katz L. A.

Trends in Microbiology doi 10.1016/j.tim.2014.04.006. IF 8.43

2014



Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

Santoferrara, L., Grattepanche, J.-D., Katz, L. A. and McManus, G. B.

Environmental Microbiology doi:10.1111/1462-2920.12380 IF 5.76.

2014



Distribution and diversity of Oligotrich and Choreotrich ciliates assessed by morphology and by DGGE in temperate coastal waters

Grattepanche, J.-D., Santoferrara, L, *Andrade, J., *Oliverio, A. M., McManus, G. B. and Katz L. A.

Aquat. Microb. Ecol., 71(3), 211-221- doi:10.3354/ame01675 IF 2.037

2014



Microplanktonic Community Structure in a Coastal System Relative to a Phaeocystis Bloom Inferred from Morphological and Tag Pyrosequencing Methods

Monchy, S., Grattepanche, J.-D., Breton, E., Sanciu, G., Christaki, U., Viscogliosi, E. and Sime-Ngando, T.

PLoS ONE 7(6): e39924. doi:10.1371/journal.pone.0039924. IF 4,092

2012



Microzooplankton herbivory during the diatom-Phaeocystis spring succession in the eastern English Channel

Grattepanche, J.-D.,Vincent, D., Breton, E. and Christaki. U.

J. Exp. Mar Biol. Ecol. 404, 87-97. IF 2.12

2011



Microbial food webs and metabolic state across oligotrophic waters of the Mediterranean Sea during summer

Christaki, U., Van Wambeke, F., Lefevre, D., Lagaria, A., Prieur, L., Pujo-Pay, M., Grattepanche, J.-D., Colombet, J., Psarra, S., Dolan, J. R., Sime-Ngando, T., Conan, P., Weinbauer, M. G., Moutin, T.

Biogeosciences,8, 1839-1852. IF 4,45

2011



Lack of P-limitation of phytoplankton and heterotrophic prokaryotes in surface waters of three anticyclonic eddies in the stratified Mediterranean Sea

Tanaka, T., Thingstad, T. F., Christaki, U., Colombet, J., Cornet-Barthaux, V., Courties, C., Grattepanche, J.-D., Lagaria, A., Nedoma, J., Oriol, L., Psarra, S., Pujo-Pay, M., Van Wambeke, F.

Biogeosciences, 8, 525-538. IF 4,45

2011



Succession of primary producers and micrograzers in a coastal ecosystem dominated by Phaeocystis globosa blooms

Grattepanche, J.-D., Breton E., Brylinski J.-M. and Christaki U.

J. Plankton Res., 33, 37-50 IF 1,61

2011



Temporal changes of major bacterial groups and bacterial heterotrophic activity during a Phaeocystis globosa bloom in the eastern English Channel

Lamy, D., Obernosterer, I., Laghdass, M., Artigas, L. F., Breton, E., Grattepanche, J.-D., Lecuyer, E., Degros, N., Lebaron, P. and Christaki, U.

Aquat. Microb. Ecol., 58, 95-107. IF 2,19

2009


Publications in progress

( * = UNDERGRADUATE AUTHOR)

Analysis of biodiversity of Stramenopiles, Alveolata and Rhizaria (SAR).

Grattepanche, J.-D., Walker, L. M., Ott, B. M., Paim, D. L., Delwiche, C. F. , Lane, C. E. & Katz, L.A.

In prep

Ciliates community change induced by copepod grazing and phytoplankton bloom: microcosm experiments.

*Juarez, D., *Wood, C., McManus, G. B., Katz, L. A. and Grattepanche, J.-D.

In prep

Spatial and temporal distributions of ciliates in New England tide pools

Badger, M., Tucker, S. J., Katz, L. A. and Grattepanche J.-D.

In prep

Ciliates community change induced by copepod grazing and phytoplankton bloom: a microcosm experiments

*Juarez, D., *Wood, C., McManus, G. B., Katz L. A. and Grattepanche J.-D.

In prep

Stramenopiles, Alveolates, and Rhizaria in ephemeral environments (vernal pools) through HTS approach

*Sisson C., *Gulla-Devaney B., Tucker S., Grattepanche, J.-D., and Katz L. A.

In prep


Invited talks

Upcoming: Diversity of ciliates in marine systems

Grattepanche J.-D.

Ciliate meeting, Washington DC, USA

2016

Ciliates diversity off the coast of the New England

Grattepanche J.-D. and Katz L. A.

Sloan microbiology of the Built Environment Meeting 2016, UCSD, CA, USA

2016

Ciliate biodiversity in nearshore environment

Grattepanche J.-D., Santoferrara, L. F., McManus, G. B. and Katz L. A.

EMBL 2016 A New Age of Discovery for Aquatic Microeukaryotes, Postdoc / Grad student summit, Heidelberg, Germany

2016

Diversity of planktonic ciliates: Distinct assemblage dominates both photic and deep waters on the New England shelf

Grattepanche J.-D. and Katz L. A.

UMR CNRS 8187 Laboratory of Oceanography and Geosciences, FRANCE

2014

Microbial diversity in the Oceans

Grattepanche J.-D. and Katz L. A.

SMBE Eukaryotic-omics, UC Davis, CA, USA

2013

Contributed talks

( * = UNDERGRADUATE AUTHOR, UNDERLINE = PRESENTING AUTHOR)

- 2016 -

Stramenopiles, Alveolates, and Rhizaria--Oh my! A Molecular Approach to Aquatic Microbial Communities

*Sisson C., *Gulla-Devaney B., Tucker S., Grattepanche, J.-D., and Katz L. A.

Smith College Celebrating Collaborations Northampton, MA, USA

2016 (oral comm.)

Unexpected biodiversity of ciliates in marine samples from below the photic zone

Katz L. A., Santoferrara, L. F., McManus, G. B. and Grattepanche, J.-D.

New Orleans, LA, USA

2016 (oral comm.)

Coupling molecules and morphology to discover new clades of ciliates

Grattepanche, J.-D., Maurer-Alcalá X. X., Tucker S. J., McManus G. B. , and Katz L.A.

ASLO 2016, New Orleans, LA, USA

2016 (poster)

Comparing present (DNA) and active (RNA) marine ciliate communities across depth gradients

Tucker S. J. , Katz L. A., McManus, G. B., Grattepanche, J.-D.

ASLO 2016, New Orleans, LA, USA

2016 (poster)

Phytoplankton Microcosm: An Oceanic study on Algal Blooms and Ciliate Community Composition

*Juarez D., McManus, G. B., Katz L. A., Grattepanche, J.-D.

ASLO 2016, New Orleans, LA, USA

2016 (poster)

Coupling molecules & morphology to discover new clades of ciliates

Grattepanche, J.-D., Maurer-Alcalá X. X., Tucker S. J., McManus G. B. , and Katz L.A.

EMBL 2016 A New Age of Discovery for Aquatic Microeukaryotes, Heidelberg, Germany

2016 (poster)

Unexpected biodiversity of ciliates in marine samples from below the photic zone

Grattepanche, J.-D., Santoferrara, L. F., McManus, G. B. and Katz L.A.

EMBL 2016 A New Age of Discovery for Aquatic Microeukaryotes, Heidelberg, Germany

2016 (poster)

Coupling molecules and morphology to discover new clades of ciliates

Grattepanche, J.-D., Maurer-Alcalá X. X., Tucker S. J., McManus G. B. , and Katz L.A.

Pioneer Valley Microbiology Symposium at UMass Amherst, MA, USA

(poster)

Unexpected ciliate diversity in marine samples from below the photic zone

Grattepanche, J.-D., Santoferrara, L. F., McManus, G. B. and Katz L.A.

Pioneer Valley Microbiology Symposium at UMass Amherst, MA, USA

(oral comm.)

Comparing present (DNA) and active (RNA) marine ciliate communities across depth gradients

Tucker S. J. , Katz L. A., McManus, G. B., Grattepanche, J.-D.

Pioneer Valley Microbiology Symposium at UMass Amherst, MA, USA

(poster)

Phytoplankton Microcosm: An Oceanic study on Algal Blooms and Ciliate Community Composition

*Juarez D., McManus, G. B., Katz L. A., Grattepanche, J.-D.

Pioneer Valley Microbiology Symposium at UMass Amherst, MA, USA

(poster)

- 2015 -

Hyper diversity of naked ciliates in Deep Ocean

Grattepanche, J.-D., Santoferrara, L. F., McManus, G. B. and Katz L.A.

Gordon Research Seminar - Applied & Environmental Microbiology 2015, Mount Holyoke College, MA, USA

2015 (poster)

Diversity of planktonic ciliates: Distinct assemblage dominates both photic and deep waters on the New England shelf

Grattepanche, J.-D., Santoferrara, L. F., McManus, G. B. and Katz L.A.

Gordon Research Conference - Applied & Environmental Microbiology 2015, Mount Holyoke College, MA, USA

2015 (poster)

Microbial biodiversity in the ocean

*Schwartz M., *McDannell B., *El-Banna G., Grattepanche J.-D., Katz L.A.

Smith College Celebrating Collaborations, Smith College, MA, USA

2015 (poster)

- Before 2015 -

Microbial diversity in the Oceans

Grattepanche, J.-D. and Katz L.A.

Sigma Xi, Smith College, MA, USA

April 2014 (oral comm.)

Diversity and distribution of ciliates in marine environments

Grattepanche, J.-D. and Katz L.A.

Evolution meeting 2013, Snowbird, UT, USA

2013 (oral comm.)

N-limited or N and P co-limited indications in the Mediterranean surface waters: BOUM microcosm experiments

Tanaka T., T.F. Thingstad, U. Christaki, V. Cornet-Barthaux, C. Courties, J.-D. Grattepanche, A. Lagaria, L. Oriol, S. Psarra, M. Pujo-Pay, F. Van Wambeke, T. Moutin

ASLO 2010, Portland, USA

2010 (oral comm.)

Impact of anticyclonic mesoscale features on the microbial food web in the Mediterranean Sea

Christaki U., D. Lefevre, F. Van Wambeke, A. Lagaria, J.-D. Grattepanche, S. Psarra, J. Colombet, T. Sime-Ngando, M. Weinbauer, T. Moutin

ASLO 2010, Portland, USA

2010 (oral comm.)

Phaeocystis globosa – heterotrophic protists interactions – a bottom-up view..

Grattepanche J.-D., Breton E. and Christaki U.

SAME 11 (Symposium of Aquatic Microbial Ecology), 2009, Piran, Slovenia

2009 (oral comm.)

A « High frequency » study of hydrobiological parameters between March and July 2006: Intertidal area of the Eastern English Channel

Grattepanche J.-D., V. Gentilhomme, F. Goulard, N. Guiselin

Colloques PNEC Manche orientale-Phaeocystis blooms: Causes & Consequences, Wimereux, France

2007 (poster)